{
  "_id": "6a0f6e5aacfb0bcc41c5ee6d",
  "Package": "ggvolc",
  "Type": "Package",
  "Title": "Create Volcano Plots for Differential Gene Expression Data",
  "Version": "0.1.0",
  "Authors@R": "person(\"Loukas\", \"Theodosiou\",\nemail = \"theodosiou@evolbio.mpg.de\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-6418-4652\"))",
  "Description": "Provides functionality to create customizable volcano\nplots for visualizing differential gene expression analysis\nresults. The package offers options to highlight genes of\ninterest, adjust significance thresholds, customize colors, and\nadd informative labels. Designed specifically for RNA-seq data\nanalysis workflows.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "libicu-dev libjpeg-dev libpng-dev libxml2-dev\nlibssl-dev",
  "Repository": "https://loukesio.r-universe.dev",
  "Date/Publication": "2026-01-19 20:28:10 UTC",
  "RemoteUrl": "https://github.com/loukesio/ggvolc",
  "RemoteRef": "HEAD",
  "RemoteSha": "fef23c863248f6d482b981612419248f13b9b8d8",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-21 07:55:34 UTC",
    "User": "root"
  },
  "Author": "Loukas Theodosiou [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-6418-4652>)",
  "Maintainer": "Loukas Theodosiou <theodosiou@evolbio.mpg.de>",
  "MD5sum": "9cd109fa5b34960ba28538600a74c4e8",
  "_user": "loukesio",
  "_type": "src",
  "_file": "ggvolc_0.1.0.tar.gz",
  "_fileid": "efb9910473fc8e09a8a8bc4006ff6be260f47ca7354c14dd709f613a95320c2b",
  "_filesize": 335350,
  "_sha256": "efb9910473fc8e09a8a8bc4006ff6be260f47ca7354c14dd709f613a95320c2b",
  "_created": "2026-05-21T07:55:34.000Z",
  "_published": "2026-05-21T20:43:06.768Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 77264788256,
      "time": 137,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7130281107"
    },
    {
      "job": 77264787920,
      "time": 139,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130281588"
    },
    {
      "job": 77264787955,
      "time": 96,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7130267767"
    },
    {
      "job": 77264787978,
      "time": 107,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130270980"
    },
    {
      "job": 77264787280,
      "time": 185,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130237627"
    },
    {
      "job": 77264787285,
      "time": 108,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7146736587"
    },
    {
      "job": 77264787882,
      "time": 97,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": ""
    },
    {
      "job": 77264788461,
      "time": 92,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7130266809"
    },
    {
      "job": 77264787784,
      "time": 91,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7130266572"
    }
  ],
  "_buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/loukesio/ggvolc",
  "_commit": {
    "id": "fef23c863248f6d482b981612419248f13b9b8d8",
    "author": "Loukas Theodosiou <theodosiou@evolbio.mpg.de>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update badges in README.md for ggvolc package",
    "time": 1768854490
  },
  "_maintainer": {
    "name": "Loukas Theodosiou",
    "email": "theodosiou@evolbio.mpg.de",
    "login": "loukesio",
    "twitter": "@loukesio",
    "description": "https://twitter.com/loukesio",
    "uuid": 13181494,
    "orcid": "0000-0001-6418-4652"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggrepel",
      "role": "Imports"
    },
    {
      "package": "ggtext",
      "role": "Imports"
    },
    {
      "package": "gridExtra",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    }
  ],
  "_owner": "loukesio",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-36",
      "n": 2
    },
    {
      "week": "2026-02",
      "n": 4
    },
    {
      "week": "2026-04",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "bioinformatics",
    "data-science",
    "data-visualization",
    "gro-seq",
    "rna-seq"
  ],
  "_stars": 72,
  "_contributors": [
    {
      "user": "loukesio",
      "count": 36,
      "uuid": 13181494
    }
  ],
  "_userbio": {
    "uuid": 13181494,
    "type": "user",
    "name": "Loukas Theodosiou",
    "description": "https://twitter.com/loukesio"
  },
  "_downloads": {
    "count": 488,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ggvolc"
  },
  "_devurl": "https://github.com/loukesio/ggvolc",
  "_searchresults": 3,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/ggvolc.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/loukesio/ggvolc",
  "_realowner": "loukesio",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-01-16"
    }
  ],
  "_exports": [
    "genes_table",
    "ggvolc"
  ],
  "_datasets": [
    {
      "name": "all_genes",
      "title": "Gene Expression Analysis Dataset",
      "object": "all_genes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "genes",
        "baseMean",
        "log2FoldChange",
        "lfcSE",
        "stat",
        "pvalue",
        "padj"
      ],
      "rows": 4857,
      "table": true,
      "tojson": true
    },
    {
      "name": "attention_genes",
      "title": "Attention Genes Dataset",
      "object": "attention_genes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "genes",
        "baseMean",
        "log2FoldChange",
        "lfcSE",
        "stat",
        "pvalue",
        "padj"
      ],
      "rows": 10,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "all_genes",
      "title": "Gene Expression Analysis Dataset",
      "topics": [
        "all_genes"
      ]
    },
    {
      "page": "attention_genes",
      "title": "Attention Genes Dataset",
      "topics": [
        "attention_genes"
      ]
    },
    {
      "page": "genes_table",
      "title": "Combine a ggplot Object with a Table of Genes",
      "topics": [
        "genes_table"
      ]
    },
    {
      "page": "ggvolc",
      "title": "Create a Volcano Plot",
      "topics": [
        "ggvolc"
      ]
    }
  ],
  "_readme": "https://github.com/loukesio/ggvolc/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "commonmark",
    "cpp11",
    "curl",
    "dplyr",
    "farver",
    "generics",
    "ggplot2",
    "ggrepel",
    "ggtext",
    "glue",
    "gridExtra",
    "gridtext",
    "gtable",
    "isoband",
    "jpeg",
    "labeling",
    "lifecycle",
    "litedown",
    "magrittr",
    "markdown",
    "pillar",
    "pkgconfig",
    "png",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xml2"
  ],
  "_score": 5.03342375548695,
  "_indexed": true,
  "_nocasepkg": "ggvolc",
  "_universes": [
    "loukesio"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-04-21T07:29:33.000Z",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "a07cca0037810183cb9e98175bdc72893b0633e9ec82b6c5ed3c748dcce61599",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/24709638317"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-21T07:57:41.000Z",
      "distro": "noble",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "699ea77e46e8b27937a33deeab1f0211756f6e8b6a08496edc8d85931f07cce8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-05-21T07:57:44.000Z",
      "distro": "noble",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "3f2802ad332ff7991f402abc499f34181b34b787753ac13a043f8c9dcf044a7d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-21T07:57:09.000Z",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "fd72c33e797b0a9a57648fdaa0f7a184c838fc013670a282c583594af84b76ba",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-05-21T07:57:16.000Z",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "9ec509cf14994b9656d5c7b7282c9a7c1ca63efeb7e9908026364813edf3e87e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-05-21T20:42:49.000Z",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "7697bc0b5b9b71caa780660acc375f8312334b5d55e432bee41a35e7bc9acc1e",
      "status": "success",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-21T07:56:56.000Z",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "cf50a8ed2fc6daf0b9decbc6c9446bb1bbfa98dc5ba7e87957f22b1197d192e6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-05-21T07:56:54.000Z",
      "commit": "fef23c863248f6d482b981612419248f13b9b8d8",
      "fileid": "3315d67b26cd8016b050ba43b430870cc26b25996655a38713d5952f330a82f0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/loukesio/actions/runs/26213038099"
    }
  ]
}